rs31690862 SNP Detail

Summary

• ID
  rs31690862
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119977219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAGTACAA AGTACAGGCA
  TTGATAGCAA CTTGGAGAGG AGAATGGGGC AAAGAGGAGA GGAGTATTTT TCAGAGACTT
  TTCTTTCATC CAAAGGGCCA AAGCTTTTTG TAGTTTTTAC TGATTGGAGT GCCACCTTTA
  TTTAGCTTTT TATGGACAAT TACATTTTTT AACATGGGTT ATATTCTAAT CTTTCTCTCT
  R
  CCAGCTGTCA CTTTGTGAAT ACAAAACTAG TATCCATTTT CACGTGTACC ATATTTATAT
  AATGGTGATT TGTCGTCCCT TATTATTTTA TTGGGGATTA CCCTTTCCTA CTGATTCTTA
  GATATATACT AAAACAACTT ATGTTAAATT CCCCATTGCA TTTCACAGGT GGCGAGCAGC
  CAGTTCACAT GCAACCCTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48078844	NES11865113	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31690862					SNP	A	A	A	A	A	G	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48078844	NES11865113	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119977219 () rs orientation: forward

Symbol	Name	Function Class
Rr380001	regulatory region 380001	1872 bp upstream
Rr637751	regulatory region 637751	1498 bp proximal
Rr637752	regulatory region 637752	1659 bp proximal
Tssr62747	transcription start site region 62747	1981 bp downstream
Wnk1	WNK lysine deficient protein kinase 1	Intron