rs31690800 SNP Detail

Summary

• ID
  rs31690800
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:119833270 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAGGAAGA CCAGGAACAG
  GAGAAATCAG AACAGATCAC ACACAAAGTC ACAAGATGGA AAAGCCACAG CTCTCCTTTG
  AACCCATGCT CACACAATGG AAATCGGTGG CAGTGACTAC TAAAAGTAAC CGTCAGGGTG
  ACTGTACTTA GTGAGCCTGC TTTGACTTAG TGGTACATCC TTTTGTGGCA CTTGTTGGCA
  R
  GCAGGGTGTA ATGCTCTGGT AGAACATAAC TCCTGAAGAG CATCACGTAG CCTACAGCCT
  CCACAGAGCT CAGCTCAGCC CAAGTCTCCA GGCTCCTCCC TGCCCAGCAC CTCAGGAGGC
  TCAAACCTTT TCTCTTCTTT TTTTCTTCTT CTTTGTTTTT TCTTTTTGAG ACACTCCCAT
  GCCCAAAAAT TTAGCCAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss48078479	NES11866111	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31690800					SNP	A	A	A	A	A	A	A	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48078479	NES11866111	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119833270 () rs orientation: forward

Symbol	Name	Function Class
Rr380000	regulatory region 380000	1157 bp downstream
Rr637739	regulatory region 637739	1705 bp distal
Rr637740	regulatory region 637740	492 bp distal