rs31690222 SNP Detail

Summary

• ID
  rs31690222
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:119832429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAACCTGG GTTCTCTGGA
  AGAGCCACCA ACCTCTCCAG CTGTCTCTCC AACCTCTGAT TTTTTAAAAT TAATTAATTA
  ATTAATTATT AAGCTAACTT TTACTGAGGC TTACATTGTG ACACACAAAT GCATTTCAAC
  AGCCAAGAAA AGAGAAATTA TGATACCAAG ATTTCAGCTC CTATAACTAC TCTAGGACAA
  R
  TTACCCGTCA CAGTTTTGTT TTGTTTTGTT TGCCTAGGCT TTTCCCTCAC AAAACTGCAA
  GTTTTCAATA TTATATTCTC TTTTCTATGG GGAGGCACCC AGGGAGATCA GATCTCAAGC
  CAACAATATG TCATCAGATC TCCTGGATTA CTATTCATGA ATAAAATCCC CCTTAAGCAT
  CGTTCCTGGA AATAGGGCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48078467	NES11866105	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31690222					SNP	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48078467	NES11866105	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119832429 () rs orientation: forward

Symbol	Name	Function Class
Rr380000	regulatory region 380000	316 bp downstream
Rr637739	regulatory region 637739	864 bp distal
Rr637740	regulatory region 637740	76 bp proximal