rs31690214 SNP Detail

Summary

• ID
  rs31690214
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:119830717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGAAACACC AATGCACATA AAATAAAATA AATTATTTTT
  TTAAAAATTA CCTAATCTTT AAAACTCAAG TCACGTTAGA TACATCAAAG AACAAGTGGT
  R
  TGGAGGGTTC AGCTAAAGAA ACTATCTAAA ATGGTGAACA AAAATAAAAC GAGAAAAAGG
  AGTTTAAAGA CACACAGGAA CTAGGTGTGG TGGTGAAAT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss48078459	NES11866164	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	G	A	G	A	G	G	G	G	G	A
ss133593608	ENSMUSSNP3002367	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31690214					SNP	A	A	A	A	G	A	G	A	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48078459	NES11866164	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119830717 () rs orientation: forward

Symbol	Name	Function Class
Rr380000	regulatory region 380000	196 bp upstream
Rr637739	regulatory region 637739	519 bp proximal
Rr637740	regulatory region 637740	1788 bp proximal