rs31689825 SNP Detail

Summary

• ID
  rs31689825
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116506572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCAG ATTTATCCCT TCCCTGTTAA
  M
  ACAATGCTCC TAGAATTAAG CTTAC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45559660	mCV23407512	ABI	CRAMUS_MOUSE	f	SNP	A	C	A	C
ss135671148	ENSMUSSNP5094200	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C		C
ss320895939	CHEV_3_116415841	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31689825					SNP	A	C	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116506572 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13739	CpG island 13739	414 bp distal
Gm54181	predicted gene, 54181	Intron
Gm64822	predicted gene, 64822	within coordinates
Rr583764	regulatory region 583764	1662 bp distal
Rr583765	regulatory region 583765	703 bp distal
Rr583766	regulatory region 583766	506 bp distal
Rr583767	regulatory region 583767	284 bp distal
Rr583768	regulatory region 583768	within coordinates
Slc35a3	solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3	206 bp upstream
Tssr35331	transcription start site region 35331	1139 bp upstream
Tssr35332	transcription start site region 35332	1076 bp upstream
Tssr35333	transcription start site region 35333	1058 bp upstream
Tssr35334	transcription start site region 35334	1041 bp upstream
Tssr35335	transcription start site region 35335	683 bp upstream
Tssr35336	transcription start site region 35336	654 bp upstream
Tssr35337	transcription start site region 35337	413 bp upstream
Tssr35338	transcription start site region 35338	268 bp upstream
Tssr35339	transcription start site region 35339	200 bp upstream