rs31689580 SNP Detail

Summary

• ID
  rs31689580
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:119829640 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGAGTTTGT CTTTTACTAT
  AAGATGGCTT TTAAACCTAA ATTGGAAAAA GGCTGGTTCT TAAGCAGGAA GCCCTAGGTT
  CAATACCCAG TACTGAAAGC AAAAATAAGA ACAACAAACT TTCTAAATAG CTATGCACAC
  CACTAATGCA TATCTAAGTT CTCTTGTGAG AACTTAGTAT AGCCCTTTCT TCTTTGTAGG
  Y
  AAGTTGAAAA TAGAGCTTTC ATTGTGTGTG ACCATACATA GAATTAAAAT TAAGACTGAT
  AGCCAAGCCC ATAGTGGCAC ACACTTCTTG TACCTGTACT TAGGAGAAAC AGACAAGAAT
  CTGGAGTTAA ACAATACAAG AGCTACCAAA AAAAAAAAAA AAAAAAAAAA TACCATTTAA
  AAACAAAAAC AAAACAAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss48078455	NES11866176	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31689580					SNP	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48078455	NES11866176	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119829640 () rs orientation: forward

Symbol	Name	Function Class
Rr380000	regulatory region 380000	1273 bp upstream
Rr637739	regulatory region 637739	1596 bp proximal