rs31689167 SNP Detail

Summary

• ID
  rs31689167
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:62414545 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGCG CCAGCGGTGT GAGCCGCGGT
  K
  CGTGTTCTGG CCAGAAACTT AGCTC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J
ss45560000	mCV23160682	ABI	CRAMUS_MOUSE	f	SNP	G	T
ss135232105	ENSMUSSNP1309374	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J
rs31689167					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:62414545 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13215	CpG island 13215	within coordinates
Dhx36	DEAH-box helicase 36	120 bp upstream
Gm65214	predicted gene, 65214	within coordinates
Rr577528	regulatory region 577528	1279 bp distal
Rr577529	regulatory region 577529	39 bp distal
Rr577530	regulatory region 577530	65 bp distal
Rr577531	regulatory region 577531	within coordinates
Tssr33431	transcription start site region 33431	157 bp upstream
Tssr33432	transcription start site region 33432	97 bp upstream