rs31689164 SNP Detail

Summary

• ID
  rs31689164
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145647253 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAGGGGTG GCACGCACAT
  TAAAAATAGA TAAATATTAA ATTGTTAATT TGGACTTGTG TGTTGGTTAC TGAATATAAC
  TCTTGTAATA AATAGCCCCC CTCCTTTTTT GAAATTGGGT CTGACACTAT GTAGCCAGAT
  GGCCGTGAAC TTCCGATCCT CTTGCCCCTG CCTCTCAAAC TGAGATCACA CGTCTGTACC
  W
  CCCTCTATTC TGTGCTCCTA GATGTTGAAC CTAGGGTTTT CTGTGTGCTA GGCGAACACT
  CGACCTACTC AGCCACATCC TCAGCCAGTG CACACTCCCG TGCCATAGGA AGTTGCTGAA
  AATATTAATT TGCCTGACAT TTCCTCTTTG TACACATGTG AACGTGGAGA CCAGAGGACC
  ACCCTGGGTG TCAGCCTTAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45559997	mCV24197595	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	A
ss136040828	ENSMUSSNP591275	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		A
ss321009177	CHEV_3_145604462	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31689164					SNP	T	T	A	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145647253 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
2410004B18Rik	RIKEN cDNA 2410004B18 gene			Intron
				Noncoding-Transcript-Variant
Rr398109	regulatory region 398109			552 bp upstream
Rr586876	regulatory region 586876			1585 bp distal
Rr586877	regulatory region 586877			444 bp proximal
Rr586878	regulatory region 586878			658 bp proximal