rs31687116 SNP Detail

Summary

• ID
  rs31687116
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:27336200 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGCATGCA AGTGCACATG
  CCATGGCCCA CATGTGGAGG TCAGAGAACA ACTTCTGGGG TTGGTTCTAA TCTTCCTTGT
  TTGAGACAGA GTCTCTTGTT ATTTACTGCA TAAGCTATGA CAGCTGTCCC CAAAGCTTCC
  GGGGACCCTC CTGTCTCTGC CTCCACCCAT TTCTGCCTTC TTTCAGTGAA AGCCTTGGTG
  W
  CACCCAGGGT GTCACCCACT TTGTGTGAGT TCTGGGGGTT ACCCTCAGAC CCCATGCTTG
  TGTGATAAAC ATTTTATCAA TTGAGCCATC TCTCTAGCTC CTTCCTTGTC TTTATAAATA
  TCATTTTCAT TTCATAGGTG CACACATATC TGTGTACCTT GTGCTTGCCC AATGGCAGCA
  GAAGCCAGAA GAGAGCACTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45559178	mCV22684220	ABI	CRAMUS_MOUSE	f	SNP	A	T	A
ss134703427	ENSMUSSNP2863836	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs31687116					SNP	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27336200 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13020	CpG island 13020	1436 bp proximal
Gm42192	predicted gene, 42192	within coordinates
Rr574384	regulatory region 574384	1908 bp distal
Rr574385	regulatory region 574385	1275 bp distal
Rr574386	regulatory region 574386	817 bp proximal