rs31687002 SNP Detail

Summary

• ID
  rs31687002
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:142015423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGATTCAT GCTGTTTATT
  CATATATAAA TCACCATATC TGCTTTCCAG TAATGTAGAT ACTAACTTTG TCACGTGTGT
  TTTCTGTAAA GAGAAAAGCA TTTTAAACCA TTATTTGAAT ACACCATTAA TGTTTGCATC
  TTTTGAGGCT GATTCTTCAA AACACCACAT ACAAACTGTT AATGTTGCAG CCAAAGAAGA
  Y
  TGAAATTAAT GGAGGATACA CAAAAGGACT TACCTCCTGA GAGCAGTGGC ACATTATAAT
  GCAGGACATG TGGACAGTGA AACGCAAATC AGTTAATCTA TTTCGTGTAA GGCAGTTTGT
  TTCTAGTCAG GAATGTAAAC CCTGTTCTAT TCTTCATGGA GTAAAAGTGT AGCAGAGAGG
  AGCAGCATGC CAAGAGCAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45559721	mCV24246489	ABI	CRAMUS_MOUSE	f	SNP	T	T	T					C		C
ss61087815	NES16611419	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	T	T		T	C	C	T		T	C	T	T		C
ss136012037	ENSMUSSNP1037077	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							C
ss321000230	CHEV_3_141972626	CHEVERUD	SCREENING_POP	f	SNP													T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31687002					SNP	T	T	T	C	T	T	T	C	T	C	C	T	T	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61087815	NES16611419	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142015423 () rs orientation: forward

Symbol	Name	Function Class
Pdlim5	PDZ and LIM domain 5	Intron
Rr586413	regulatory region 586413	829 bp proximal
Rr586414	regulatory region 586414	1500 bp proximal