rs31686868 SNP Detail

Summary

• ID
  rs31686868
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:156443599 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGCT TCCCTGCCTG GGCAGGGATG
  Y
  CTCGGAGTTC GCTGTGGCCC ACGTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45058846	mCV23342414	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss145800288	ENSMUSSNP1164342	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31686868					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156443599 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Abl2	ABL proto-oncogene 2, non-receptor tyrosine kinase			Coding-NonSynonymous
				Intron
Rr396424	regulatory region 396424			1285 bp downstream
Rr396425	regulatory region 396425			121 bp downstream
Rr421201	regulatory region 421201			1389 bp distal
Rr421202	regulatory region 421202			1186 bp distal
Rr421203	regulatory region 421203			within coordinates
Rr421204	regulatory region 421204			368 bp distal
Rr421205	regulatory region 421205			959 bp proximal
Tssr9572	transcription start site region 9572			167 bp downstream
Tssr9573	transcription start site region 9573			143 bp downstream
Tssr9574	transcription start site region 9574			96 bp downstream