rs31686740 SNP Detail

Summary

• ID
  rs31686740
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119636959 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTGCTAGA AAATTACTGC
  AGGTCAGAGA CAAAGGGAAA CTTGGATGGA GACAATCATA CAACTTTTTT TTATCAATTC
  CCAAGGTTCA TGTTTGCCTG AAGCTGAGGA GCATCACTGA GCAGCTTTCT TTGAACACAG
  GGAACTCTGA GTAAAGAGAA TTCTGCTATA GTCATGCTTC AAGTTAAAGG TTTCCATGGT
  Y
  CTTTTAATAT TTTATATTTA GCACAACTCT AGTAACTAAT CTAAAACATT TTGTACACTA
  ATATTAAGAT GCCTCCTGTA CTACCTGTGT CTGTGGGGTC TACATCAGAA CCCAACCAAC
  CATGGGTGGA AAGTAGTTTT AAAATTTTTA GTCTATAGTG CACCCATACA CATTAGGCTT
  TATTATTATT TCGTGCTCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48077321	NES11882767	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31686740					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48077321	NES11882767	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119636959 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Erc1	ELKS/RAB6-interacting/CAST family member 1			Intron
				Noncoding-Transcript-Variant
Gm67959	predicted gene, 67959			779 bp downstream
Rr637723	regulatory region 637723			1819 bp distal
Rr637724	regulatory region 637724			1021 bp proximal