rs31686736 SNP Detail

Summary

• ID
  rs31686736
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119636872 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTGATAAC AATGCAGACT
  CCTGGCACAC TCCACCATTC CTCTTACTAC AAGCATACCC TTCAGTTTCT TCCTTATGAA
  GCTGCTTAAG TGCTAGAAAA TTACTGCAGG TCAGAGACAA AGGGAAACTT GGATGGAGAC
  AATCATACAA CTTTTTTTTA TCAATTCCCA AGGTTCATGT TTGCCTGAAG CTGAGGAGCA
  K
  CACTGAGCAG CTTTCTTTGA ACACAGGGAA CTCTGAGTAA AGAGAATTCT GCTATAGTCA
  TGCTTCAAGT TAAAGGTTTC CATGGTTCTT TTAATATTTT ATATTTAGCA CAACTCTAGT
  AACTAATCTA AAACATTTTG TACACTAATA TTAAGATGCC TCCTGTACTA CCTGTGTCTG
  TGGGGTCTAC ATCAGAACCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48077317	NES11882765	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G		T	T	G	T
ss133592452	ENSMUSSNP2420797	ENSEMBL	ENSEMBL_Sanger	f	SNP								T				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31686736					SNP	T	T	T	T	T	T	G	T	T	T	G	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48077317	NES11882765	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119636872 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Erc1	ELKS/RAB6-interacting/CAST family member 1			Intron
				Noncoding-Transcript-Variant
Gm67959	predicted gene, 67959			692 bp downstream
Rr637723	regulatory region 637723			1732 bp distal
Rr637724	regulatory region 637724			1108 bp proximal