rs31686406 SNP Detail

Summary

• ID
  rs31686406
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135391617 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ACGGAGAGAC TTGAGAACTA CAGGGGATAT GGTAGGTAGC CGGTGGGTGT GCTCTCACAT
  GGATCTACGG CATAGCAGGT TCAGTTCTAA CCACAGGATA CATAACAAAT GTAATGACTT
  GGAAGCTTTT TGCTATTTGA ATAAATAAGA TTCATTCAAA CACTCCATTC TCTTAAATGC
  TAACTTCTTC TCTAGAGGAC ACTTAACCCG ATACAGAGCG TTTCTTACTT CAGGCTTATA
  AATAGTAAGC CCGCTACAGA GACTCTACTG AGCCTTGCTT ATCAACAGGT TTACACTGAA
  R
  GGGAAAAAAA TAAAATAAAC CAATGAGTGT TAAATCTAAT ATGTATGGCT ATGCATATGT
  CTCTGACGAG CACAGCGTCT AGAACAAGTT ACAGCTTTGT TTATTCTAGA TATATGCAGA
  AGCTGCAGGA TGGGTTGATC ATGCGGTGGA GCCCAGCTAA ACATACTGCT TTGAGGTAGC
  AGCATTAGCG GGAAGACACA GGCAGTGTGC TTGGGTTGTA TACACTTTTA ACTGACAACC
  GCTGCCAATC ATTTCCACAG CCCCTCTCAG CAAAGACAGC TTCCCATGCA AACACTTACA
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45559622	mCV25339290	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31686406					SNP	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135391617 () rs orientation: forward

Symbol	Name	Function Class
Nfkb1	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	Intron
Rr585765	regulatory region 585765	618 bp proximal