rs31684310 SNP Detail

Summary

• ID
  rs31684310
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:106695696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTATAATAC ATTCATAGTA GTCTTCTCTC TGAGGGAGTC
  TTTGGAAAAC TCCTGAACTC CTGTATATTG TGTGCACTCT CCCTACTTTA TAGAAAAGAG
  Y
  ATATTATTTT GTGTTATGTG TGTCCTAATA TCTGCCCTCC ATGGTAATCT CTTTGTGATT
  GACAACCACA TCCGTTAACT TTGTGTTTCT AGAACCTGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
ss45559155	mCV23492358	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss135580369	ENSMUSSNP5804049	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
rs31684310					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:106695696 () rs orientation: forward

Symbol	Name	Function Class
Cd53	CD53 antigen	Intron
Rr397926	regulatory region 397926	1417 bp upstream
Rr582867	regulatory region 582867	within coordinates
Rr582868	regulatory region 582868	1446 bp proximal
Rr582869	regulatory region 582869	1759 bp proximal
Tssr1002	transcription start site region 1002	353 bp upstream
Tssr1003	transcription start site region 1003	152 bp upstream
Tssr31142	transcription start site region 31142	112 bp downstream
Tssr31143	transcription start site region 31143	379 bp upstream
Tssr31144	transcription start site region 31144	419 bp upstream
Tssr31145	transcription start site region 31145	478 bp upstream
Tssr31146	transcription start site region 31146	1784 bp upstream
Tssr34999	transcription start site region 34999	262 bp upstream
Tssr35000	transcription start site region 35000	188 bp downstream
Tssr35001	transcription start site region 35001	1623 bp downstream
Tssr35002	transcription start site region 35002	1654 bp downstream
Tssr35003	transcription start site region 35003	1667 bp downstream
Tssr35004	transcription start site region 35004	1693 bp downstream
Tssr35005	transcription start site region 35005	1749 bp downstream
Tssr35006	transcription start site region 35006	1763 bp downstream
Tssr35007	transcription start site region 35007	1795 bp downstream