rs31683594 SNP Detail

Summary

• ID
  rs31683594
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:133289660 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ACCAGGCTGG CCTTGAATAC ACAGATCTAC CTGCTTCTGC CTCCTGAGTG CTGGAATGGA
  AGGCGTATAC TATACACCGT GCCCAGCATA ATTTACTTAT TAAAAACTTC TGTGAATATA
  TTTTTTTCTT GCTGTGAGAC AGAGTCACAC TTTGTGGCTC AGACTGCCGA GGAACTCACG
  ATCCTTCAGT GTCACTGTTC TGAGTGCTGG GCCTTCACAC TTCCTCGTGA GAGGTTTCAC
  TTTGGGAAAA ATTATTCAGC TTTTTAAAAA AGTATTTTTA TGTGGTGTGT GTGTGTCTCT
  S
  TGTGTGTGTG TGTGTGTGTG AATGCATGTC ACATGTGTGG AAGTGTCAGA AGAGCCCAGA
  AGAAGCCGGA AGAGCACCTT GGATCCCCCG AGCTAGTGTT ACAGGTGGTT AGAATACCTG
  ACATAGTTGC TGGGAACCAA ACTCTCAGGT CTCCTGGAAG AGTAGAAACA ACTACCAGGT
  AATCCTTGCA GCCCTACAAC TTTAGTTTTA AAATTTCAAA CTTACAGATA AATGCCAAGA
  CTAATACAAC ATTGCTTATG AATTTATATC ACTAACATCA TCAATTATCA ATATTTGGAT
                                                                   
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45559322	mCV23278139	ABI	CRAMUS_MOUSE	f	SNP	C	C	G	G	G
ss135918745	ENSMUSSNP3679891	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31683594					SNP	C	C	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:133289660 () rs orientation: forward

Symbol	Name	Function Class
Gm42567	predicted gene 42567	within coordinates
Rr398036	regulatory region 398036	684 bp downstream
Rr585576	regulatory region 585576	313 bp distal
Rr585577	regulatory region 585577	1152 bp proximal