rs31683150 SNP Detail

Summary

• ID
  rs31683150
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152054938 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAACACAC ATACACATAA
  AATAATACAA ATAAAGCACC CGTAGGGCAC ATGAATTTTG TGCAGTGTGG TGTCTGTATG
  TGTAATGAGA ACTCATATTT AAGAGACAGT GCATTTGTGT TACTTCAGAG AGTAGGTAGG
  TCAGTAACCT GTTGAAGGCA AGGCTCTCCT AATAAGAGGA GTGGCCCATA GGGCTGTAGC
  K
  ATGTGGGAGA GCACTTAGTA TGCACAAGGC CCCGACTCTG CTCCCCAGAA CTACGGGGTG
  GGAACCGAAT GCAACATGTT TTCTAAAACT CTACAGTTGA GTAGGGTCTT TGCTGTGGGT
  TAGCCCGGGG CCTGTGCATG CTAGGCAAGC ACCTGTAACC CCCTAGCTGA TTCTTTGCTT
  TTTATTCTGA AACTAGCCTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45559143	mCV25024212	ABI	CRAMUS_MOUSE	f	SNP	T			G
ss136102638	ENSMUSSNP4437608	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T	G
ss321028726	CHEV_3_152012265	CHEVERUD	SCREENING_POP	f	SNP					G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs31683150					SNP	T	T	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152054938 () rs orientation: forward

Symbol	Name	Function Class
Rr587535	regulatory region 587535	1640 bp distal
Rr587536	regulatory region 587536	1307 bp proximal
Tssr32407	transcription start site region 32407	727 bp downstream
Tssr32408	transcription start site region 32408	703 bp upstream
Usp33	ubiquitin specific peptidase 33	Intron