rs31682848 SNP Detail

Summary

• ID
  rs31682848
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:27779060 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TGTCTCGGAT AGTGCGTGTA AGTAACCACA ATAAACTCAG TTGTCCCCCA AGTTTGATGT
  TGGAGGAATC GTACTTCGGT TTGTCTTTTG GTGCCCTTAA CTGGTGTCAA CATTTGTTTC
  CTCAGGGAAA GAGTTCCCAG AGACACTGGG CAGGACAACT CTGAACAGAC CAATCAATGT
  TCAATGGGGT CTGCCCTGGC AAACCGTGCG TAGAACTGTG TAGACCTGAT GCTTGCACTT
  CCACGATATC TTCTGGTTAG CCTTGTCCTA GGTACACAGA TACAAGTTAC AACCAAGCTT
  Y
  TCACCTTGGA GAGATTCTAT GATGACAGGA AGATACGGAC AAACAATGCA GTGTACTTTA
  TTAGAGGATG AAGCATTCTA AAAATCTAAA CACTTTTAGG AGGTAACTTT ACCTCCAGGT
  GGATGGAATC CTTCCTTCTT TCTCTTCTTT CTTTCCTAGA AAGAGTCTAA CATAGTCCTG
  GCTGGCCTTG AGCTCTTGAG TTTCAGATAC CCCTGTCTCT ACTTCCTAAA TGCTTGGATT
  GCAGCCATGG TATATGCGGT GCTGGGGATC GAACCTGGGA CCTCATGCAT GCTAGGCTGA
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45558990	mCV25204350	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31682848					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27779060 () rs orientation: forward

Symbol	Name	Function Class
Rr574477	regulatory region 574477	284 bp distal
Rr574478	regulatory region 574478	870 bp proximal