rs31678178 SNP Detail

Summary

• ID
  rs31678178
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:119544496 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGGCAAGT GCTGGACCTC
  TGAGACATTT AGGTGGTACA TCCTTTTGTT TGCATGTTAC AGACATGTGA AGGCTGGAGG
  TCAAAGGCTT AAGTGACATA ACCAGGGATG AGGCCACACA CTTTGATGGC AGCAAAGCCT
  AGCTGGGAAC CTGTTCTACA TCTGAGCTCC ATGTGCACCT GCCTTCATGG TCAAGGTTTG
  W
  GCTGGTTCTT TGTCTGAGTA GGGCCAGTCT TCTGTCTGCC TCACTTCAGG ACAGCTCCTC
  CTAGCAGGCA GGGCCTTGTG GGAGGGTCAG CCAGCTGCTG TAGAACCAGC CTGGAGAGAA
  TAACATTCGA CAGTGGGCCT GCTCATGGCT GTGGGTGTTC TGTGTGCCTG TATCTTAGTC
  CACTCACTGA TGCTGTAACA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48076591	NES11868180	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31678178					SNP	T	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48076591	NES11868180	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119544496 () rs orientation: forward

Symbol	Name	Function Class
Gm44317	predicted gene, 44317	within coordinates
Rr637715	regulatory region 637715	1610 bp distal