rs31678176 SNP Detail

Summary

• ID
  rs31678176
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:119544279 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCAGAGAG CAGCGTCCTT
  CCTGAAGGGC AATGCACATT GTCAGCATCT CCATGGGTTG CCGTGGGTTT CCAAAGCAAG
  CTTTGGCTTT GAAGTGATTT ACTATAACAA ATGACTGTTA AGTGTCAAGC ACACCCTTTT
  ATTGACCCGG GCTTGATGCT TTCTTGTGCA TCCTCTCCTG CTGATGTTGT GGGAGTGGAA
  Y
  CCACAGATAG CACACACTAG GCAAGTGCTG GACCTCTGAG ACATTTAGGT GGTACATCCT
  TTTGTTTGCA TGTTACAGAC ATGTGAAGGC TGGAGGTCAA AGGCTTAAGT GACATAACCA
  GGGATGAGGC CACACACTTT GATGGCAGCA AAGCCTAGCT GGGAACCTGT TCTACATCTG
  AGCTCCATGT GCACCTGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss48076589	NES11868232	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	C	T	C	C	C	C	T	C	T
ss133591088	ENSMUSSNP4580791	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31678176					SNP	C	C	T	C	T	C	T	C	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48076589	NES11868232	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119544279 () rs orientation: forward

Symbol	Name	Function Class
Gm44317	predicted gene, 44317	within coordinates
Rr637715	regulatory region 637715	1393 bp distal