rs31676628 SNP Detail

Summary

• ID
  rs31676628
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:81823000 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCCC CCATGATCCC ATAGCCTCCC
  M
  CCCACTGGAA TTTGCCCCAC TCCCC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46057534	mCV25417763	ABI	CRAMUS_MOUSE	f	SNP	C	C	A	C
ss145171523	ENSMUSSNP1491454	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31676628					SNP	C	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:81823000 () rs orientation: forward

Symbol	Name	Function Class
Gm45089	predicted gene 45089	within coordinates
Gm73333	predicted gene, 73333	within coordinates
Rr650249	regulatory region 650249	1054 bp proximal
Rr650250	regulatory region 650250	1555 bp proximal
Sh3gl3	SH3-domain GRB2-like 3	1581 bp upstream
Tssr67529	transcription start site region 67529	546 bp upstream
Tssr67530	transcription start site region 67530	1546 bp upstream
Tssr67531	transcription start site region 67531	1574 bp upstream
Tssr67532	transcription start site region 67532	1618 bp upstream
Tssr67533	transcription start site region 67533	1935 bp upstream
Tssr67534	transcription start site region 67534	1954 bp upstream
Tssr73370	transcription start site region 73370	1446 bp downstream