rs31676207 SNP Detail

Summary

• ID
  rs31676207
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:119542464 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGGCAGGCC TGCTGACTGT CTTTCCTGCT CTTTAGGCAA
  TTGTTCCATG GGTGATTTGG GCCTGTTCTG TGTCTCCCTT ACCTTGCTGT AAGTCCTTTA
  K
  GCCCAACAGA AACTCTATCA GTCAAGGGAA CTGTAGGAGG GGAACTAGGA AGAGGCACTG
  AGGCCCTCGG GCTCCAGCTG GTCTGCCCTT GGTTGACGC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MSM/Ms	NOD/ShiLtJ	PWD/PhJ	SM/J
ss48076567	NES11868221	PERLEGEN	MM_PANEL2	f	SNP		T	G		G	G			T	T
ss133591052	ENSMUSSNP148365	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T				T
ss321928727	CHEV_6_119515521	CHEVERUD	SCREENING_POP	f	SNP							T				G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MSM/Ms	NOD/ShiLtJ	PWD/PhJ	SM/J
rs31676207					SNP	T	T	G	T	G	G	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48076567	NES11868221	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119542464 () rs orientation: forward

Symbol	Name	Function Class
Gm44317	predicted gene, 44317	721 bp upstream
Rr637714	regulatory region 637714	1825 bp distal
Rr637715	regulatory region 637715	17 bp proximal