rs31675824 SNP Detail

Summary

• ID
  rs31675824
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:84042135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGACACACT AGAACAAACA GTATGGCCCC CCACAACCAA
  ATTACAAATG GAAAGATAAA AGAAAGGATT CAAGGAGACC AGTATTATCA ACCTGAGTGG
  R
  AAATATTGCA GTGTACCTAA AACTACATGC ATGCCTTTCC TTCTTGAAGA AATTTCACTT
  GTATGATCTC AGCCACAAAA CACAAAGATG GACATACCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	SM/J
ss45558551	mCV24157271	ABI	CRAMUS_MOUSE	f	SNP	G		A		G
ss51568508	NES14672540	PERLEGEN	MM_PANEL2	f	SNP	G	A		G		A		A
ss135420910	ENSMUSSNP2714641	ENSEMBL	ENSEMBL_Sanger	f	SNP	G				G
ss320822423	CHEV_3_83938750	CHEVERUD	SCREENING_POP	f	SNP							G		G
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	SM/J
rs31675824					SNP	G	A	A	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51568508	NES14672540	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:84042135 () rs orientation: forward

Symbol	Name	Function Class
Mnd1	meiotic nuclear divisions 1	Intron
Rr578991	regulatory region 578991	558 bp proximal
Rr578992	regulatory region 578992	1669 bp proximal