rs31675502 SNP Detail

Summary

• ID
  rs31675502
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:100586767 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TGAAGCCAGG ATGGAGTATC CCTGCCGTGG GTTGGTCATC TGTGTTTTCT GTTATATGAC
  ATGTGTGTTC CCCTCCACCT CAAGCTACCC TGGGGCTGAC CCTCCCCAGG TGGTCAGCCA
  TCTTTAAGAT GCCTCCTGGG TATGTCTAAC CCTTGTTCTT TGTTCCCGTC AGGTTCCAGC
  ATACATCCTG ACCCCTAACC CAGTTAAATC ATTGCCTGCT TTTCATCTAG GGATGATGAC
  TGAAGGATTC ATTTTGTCTC AGCAGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  S
  TGTGTGTGTG TGTGTGTTTG TGTGTCTGTG TGCTTGAGAG CTCAGGCTTG CAATGGTTTA
  AAAATTAACA AAAGGAAACA CCAACCACAA AAACACATTT ATTTCTCTCT TATGCAAAAG
  TCTTGGCAAA TGGATGTGAA CGTGAGCTTT CCGGGCTCTT GGACAGGAGG GACCTTGCCC
  TCACGTGACA GTGCACCAGC AGTCCCCTCC ACCCTGTAAA CACAAGAAAG GTGGGGTGGG
  GGTGGGGGTG GAGAAGACCT TTGTTGGAAT CTGCATTGCT ATTCCAGGGC CTAGCACATC
                                                                   
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss46057125	mCV24678652	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs31675502					SNP	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:100586767 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19492	CpG island 19492	635 bp proximal
P2ry6	pyrimidinergic receptor P2Y, G-protein coupled, 6	70 bp downstream
Tssr68182	transcription start site region 68182	1320 bp upstream
Tssr73796	transcription start site region 73796	650 bp downstream
Tssr73797	transcription start site region 73797	722 bp downstream
Tssr73798	transcription start site region 73798	871 bp downstream
Tssr73799	transcription start site region 73799	1239 bp downstream
Tssr73800	transcription start site region 73800	1268 bp downstream
Tssr73801	transcription start site region 73801	1337 bp downstream
Tssr73802	transcription start site region 73802	1467 bp downstream
Tssr73803	transcription start site region 73803	1546 bp downstream
Tssr73804	transcription start site region 73804	1568 bp downstream