rs31675301 SNP Detail

Summary

• ID
  rs31675301
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:119542425 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATCCAAGC AGGGAACTCA
  CCTTCACCCA TGCACCTTGT GCAATGCTGA GCACAGCTCC CACACCCGTG GAAGAGGCGC
  CTTGTCTTTT GAGGTGAATA GAGACAGAAT GGGAGCCTAC AGAGGTGACG TGTCCCGCTC
  TGGCAGGCCT GCTGACTGTC TTTCCTGCTC TTTAGGCAAT TGTTCCATGG GTGATTTGGG
  Y
  CTGTTCTGTG TCTCCCTTAC CTTGCTGTAA GTCCTTTAGG CCCAACAGAA ACTCTATCAG
  TCAAGGGAAC TGTAGGAGGG GAACTAGGAA GAGGCACTGA GGCCCTCGGG CTCCAGCTGG
  TCTGCCCTTG GTTGACGCTG CGGCTTGCTC CCAGCCTGCC TTTTCCTCCC ACGATTCCTC
  CTGCATTAGC TCAGTGTAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48076561	NES11868218	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31675301					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48076561	NES11868218	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119542425 () rs orientation: forward

Symbol	Name	Function Class
Gm44317	predicted gene, 44317	760 bp upstream
Rr637714	regulatory region 637714	1786 bp distal
Rr637715	regulatory region 637715	56 bp proximal