rs31675299 SNP Detail

Summary

• ID
  rs31675299
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:119542395 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAGAGGCGC CTTGTCTTTT GAGGTGAATA GAGACAGAAT
  GGGAGCCTAC AGAGGTGACG TGTCCCGCTC TGGCAGGCCT GCTGACTGTC TTTCCTGCTC
  Y
  TTAGGCAATT GTTCCATGGG TGATTTGGGC CTGTTCTGTG TCTCCCTTAC CTTGCTGTAA
  GTCCTTTAGG CCCAACAGAA ACTCTATCAG TCAAGGGAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48076559	NES11868217	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	T	C	C	T	T		C	C	C	C		C
ss133591046	ENSMUSSNP4310583	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C					C
ss321928725	CHEV_6_119515452	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31675299					SNP	C	C	C	C	C	T	C	C	T	T	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48076559	NES11868217	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119542395 () rs orientation: forward

Symbol	Name	Function Class
Gm44317	predicted gene, 44317	790 bp upstream
Rr637714	regulatory region 637714	1756 bp distal
Rr637715	regulatory region 637715	86 bp proximal