rs31674668 SNP Detail

Summary

• ID
  rs31674668
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119549534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGTTGTTA TCAATACTGC
  TGACATAGGG TCTGGTGGGA CTTAGGCCTG TGGGTATCAC ATCCTACGGA GTGACATATC
  CTTGCTTTGA CCCTTCTTCA AAGACCTGGA GGGAGGCCAA TGAGTCTGTG CTTCAGTCAC
  ATAGGAGGGT GTGGTGCCAA GCCAGTCCCA GTGTTAATAG CAGAGGGCAG GACAGTAGCA
  Y
  GTGAGAACCA TCTGGACTGA CTTCATCTCT CCTGAGAAAG AAATTGAGCC AACACATTCT
  TCCCAGGAGG CCAAACGGAT GGGACAGGAC ACGGCCAGCC ACAGCGTGAC CTCCAACACC
  ACTGGTGGTC TTGTTCCAGT CTGCTCTCCT TGTTCCAGTG CTCTTCTAAA GCCCACTGGC
  GAGGAAGAGG TACACTCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48076653	NES11868076	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31674668					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48076653	NES11868076	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119549534 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Erc1	ELKS/RAB6-interacting/CAST family member 1			mRNA-UTR
				Noncoding-Transcript-Variant
Gm44317	predicted gene, 44317			within coordinates
Rr637716	regulatory region 637716			within coordinates