rs31672810 SNP Detail

Summary

• ID
  rs31672810
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:119547614 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATCTTGGT GTCAATTCCT
  TCTGGGTGAT GGATGCTTTT ATACTGTAGT CAGATCTGAT GTGGACAACC TGCTTGGGAA
  TAGGGTGAAA AAAAAAGAAG GAAGTTGAAA CCTGACTTTG AAAGCTAGTC AGAGTTGGAG
  TGGGAATCAA AGGGTGCACT TCTGCTGAGA CCAGCCCCCC AGGTGCGACA GAGACACTAG
  M
  TGGCCAAGTC TACACAGAGT GCTCTGATTC TAGGCTGCCA CTGGAGATGG CCTGCTGGTC
  TTCTCCTGCT TTTCCGGATC ATAACCAGTC TCATCACAGG GATGTGACCA GACTAGGATA
  GACTCAAGAA GGCTGCAGCA CACAGTTTTT AAATAAGTTT ATAATTTCCT GATGGATTTA
  GTTTGTGAAT AAAAAAAGAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss48076639	NES11868068	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	A	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31672810					SNP	C	C	C	C	C	C	A	C	C	C	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48076639	NES11868068	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119547614 () rs orientation: forward

Symbol	Name	Function Class
Erc1	ELKS/RAB6-interacting/CAST family member 1	143 bp downstream
Gm44317	predicted gene, 44317	within coordinates
Rr637716	regulatory region 637716	1554 bp proximal