rs3167235 SNP Detail

Summary

• ID
  rs3167235
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148644858 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATCG TTAAAAATAA ATTAGGGGCC
  C
  GCAAGATGAT TCAGTAGGCA AAAGT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148011427	ENSMUSSNP1974352	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss321421194	CHEV_4_147934510	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs3167235					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148644858 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15305	CpG island 15305			1458 bp distal
Exosc10	exosome component 10			Intron
				Noncoding-Transcript-Variant
Rr398859	regulatory region 398859			1878 bp downstream
Rr604703	regulatory region 604703			1929 bp distal
Tssr40280	transcription start site region 40280			1932 bp downstream
Tssr40281	transcription start site region 40281			1901 bp downstream
Tssr40282	transcription start site region 40282			1655 bp downstream