rs3167230 SNP Detail

Summary

• ID
  rs3167230
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148641723 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGGA CACAGAGGTC GGCACTCCAC
  Y
  ATCCTGTTAC CTCACCCGTC CCTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
ss37803205	NES09113988	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	T	C	T	C		T	C		C
ss148011327	ENSMUSSNP4497931	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C					C
ss321421167	CHEV_4_147931375	CHEVERUD	SCREENING_POP	f	SNP											C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
rs3167230					SNP	C	C	C	C	C	C	T	C	T	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37803205	NES09113988	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148641723 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15305	CpG island 15305	909 bp proximal
Exosc10	exosome component 10	1163 bp upstream
Gm23318	predicted gene, 23318	1462 bp downstream
Mtor	mechanistic target of rapamycin kinase	mRNA-UTR
Rr398859	regulatory region 398859	956 bp upstream
Rr604703	regulatory region 604703	673 bp proximal
Tssr40280	transcription start site region 40280	1156 bp upstream
Tssr40281	transcription start site region 40281	1223 bp upstream
Tssr40282	transcription start site region 40282	1469 bp upstream