rs3167229 SNP Detail

Summary

• ID
  rs3167229
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148641282 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAC GGGGCTCTGA CTGACCGTCC
  S
  CTTTCTGTCA CCTTCCTAGG TGTCC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45634885	mCV24946332	ABI	CRAMUS_MOUSE	f	SNP	G	C	G
ss148011317	ENSMUSSNP4935006	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss321421165	CHEV_4_147930934	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3167229					SNP	G	C	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148641282 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15305	CpG island 15305	1350 bp proximal
Exosc10	exosome component 10	1604 bp upstream
Gm23318	predicted gene, 23318	1021 bp downstream
Mtor	mechanistic target of rapamycin kinase	Intron
Rr398859	regulatory region 398859	1397 bp upstream
Rr604703	regulatory region 604703	1114 bp proximal
Tssr40280	transcription start site region 40280	1597 bp upstream
Tssr40281	transcription start site region 40281	1664 bp upstream
Tssr40282	transcription start site region 40282	1910 bp upstream