rs3167228 SNP Detail

Summary

• ID
  rs3167228
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148640852 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGT GAGTGAGCCT GCAGAGGAGC
  Y
  TCCTCAGCCA GGCATGGTGG GCATG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45654529	mCV24946320	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss148011302	ENSMUSSNP5756397	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
ss321421162	CHEV_4_147930504	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3167228					SNP	T	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148640852 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15305	CpG island 15305	1780 bp proximal
Gm23318	predicted gene, 23318	591 bp downstream
Mtor	mechanistic target of rapamycin kinase	Intron
Rr398859	regulatory region 398859	1827 bp upstream
Rr604703	regulatory region 604703	1544 bp proximal