rs31671180 SNP Detail

Summary

• ID
  rs31671180
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:106943930 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCGAG CGTGTGGTCA TCAACATCTC
  Y
  GGGCTGCGCT TCGAGACGCA GCTCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45558472	mCV23064092	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss135581322	ENSMUSSNP5711820	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs31671180					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:106943930 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13669	CpG island 13669	within coordinates
Gm56792	predicted gene, 56792	933 bp downstream
Kcna3	potassium voltage-gated channel, shaker-related subfamily, member 3	Coding-Synonymous
Rr397927	regulatory region 397927	1589 bp upstream
Rr582885	regulatory region 582885	435 bp distal
Rr582886	regulatory region 582886	56 bp proximal
Rr582887	regulatory region 582887	962 bp proximal
Rr582888	regulatory region 582888	1684 bp proximal
Tssr31148	transcription start site region 31148	433 bp downstream
Tssr35008	transcription start site region 35008	1429 bp downstream
Tssr35009	transcription start site region 35009	1692 bp downstream