rs31668253 SNP Detail

Summary

• ID
  rs31668253
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:103241204 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TTTTTTGGTA CATAAAATAT GTGACCTTTT ATGCCTGCAC TTTCTTCACT TAGTCTATAG
  GTATGTCTAT TATAACTTAA TTATTTCTAT GGCTGCATAA TATTTCATTG TATAGAGTTC
  TCTTTCTTTT TTCTTCTTTT GAAGAAAGGG ACTTGAAGTG TAGTCTGGTC TAGAGTCCAC
  TGTGTAGCTC AGGCTGGCTC AGACTAATTT TGTACTTCAC GCTCACATGG TAGGATTAAA
  GGCAGGCACC CCAAGCCTGT TTCTGACTTT GTATCTATGG TGATAGTGCT GAGAGTCTTA
  R
  ACTGTACTAT GTGTCTTCAT GTATTAGTTG ATGGCTATTT CAATTTCTAC TTTTTGCCTG
  TAAGGAAATA ATAGTAATAC AAGCTTCTCT CTATAATAGT GGTTCTCCCC CTTCTACCCT
  TTAAAACACC TCCTCATGTT GTGCTGACCC CCAAACATAA CTGAAATTTT GCTAGTTATG
  AATTTTAATT TAAATACCTG ATATCCAGAA TATCTGATAG GCAACCATTA TGAAATGTCA
  TTTAATCCCC AAAGGGCTCT CGGCCCACAG TTTGAGAACC ACTGGTCTAT AACCAATTTT
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45557679	mCV24543810	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31668253					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:103241204 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm43061	predicted gene 43061			within coordinates
Rr582347	regulatory region 582347			1690 bp proximal
Trim33	tripartite motif-containing 33			Intron
				Noncoding-Transcript-Variant