rs31666970 SNP Detail

Summary

• ID
  rs31666970
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119428138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGCCTGC ATTTGATCTC
  CGAATCTTAC CACGCCCCCA TCCATGAGTT CCCAGCCAAA TATAAATAAA TATGAATAAA
  TACGCAAATA GGTTAGCAGC CCAGGGTCAG CCTCCTGCCA CTGACAGGAG CTGGGCAGGC
  CAGCTGAGAC CTGCGGTTGC AATGAAGTAT TGTGTAGGAA TAGATATGAA CAAGCCACAG
  M
  TGCATGTAAC CACGCTCAAA TCTTACCAAC AGACCACAGA AAAGCAAGTC ACAGCGAACT
  TAAGTGTAAG CCATACAGAA AAACAAGAAG CTGGTTATCA CCGATACCGT GTGTGGGGGT
  GGGGTGGAGG GGTGGGGGTG TCCTCTCCAG GATGGGACAG GGGACCATGA TGAGGAAGAG
  ACCTGGAATT TCTGAGTGCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48075887	NES11871229	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31666970					SNP	A	A	A	A	A	A	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48075887	NES11871229	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119428138 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17910	CpG island 17910	1900 bp distal
Rr379998	regulatory region 379998	903 bp downstream
Rr637682	regulatory region 637682	1802 bp distal
Rr637683	regulatory region 637683	1908 bp distal
Rr637684	regulatory region 637684	1634 bp distal
Rr637685	regulatory region 637685	within coordinates
Wnt5b	wingless-type MMTV integration site family, member 5B	Intron