rs31666964 SNP Detail

Summary

• ID
  rs31666964
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119427322 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTCAGAAA CGCAAAGGGA
  AACTGCACCG GGCCCCAGCA GCTCTTCACC ACCCTGTGTG CCACCAAGTT CCCAGCCTAC
  TACAAGTGGA AATTTAAAGA TTGCCCTAAA CCCAACCAAC CAATCAAACA GAGACCCAAA
  CAAAAAAGTC TCTAGTATGT ATGTTGTTCC CACTGTCTGT CAGATGGGAG GTGCATGAAA
  Y
  AAGGCACACA GCAGTATCCT CAGGAGCTCT GTCCTGGCCA GCAGTGGTCC AAGGACTGAC
  GCTGGGCAGT CATCTTCTCT TCTGACATGC TTGCAGGGTG TGTCGATGGA CAGTGTGGCG
  CTAACGGAGA TGTTTTAGTC CCGCTGCGTA AAATATCTCA CATCCACCCT AAGAGACAGG
  ACACAGATGT GGCCAGAGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48075881	NES11871247	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T		T	T	T		T
ss321928031	CHEV_6_119400379	CHEVERUD	SCREENING_POP	f	SNP											C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31666964					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48075881	NES11871247	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119427322 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17910	CpG island 17910	1084 bp distal
Rr379998	regulatory region 379998	87 bp downstream
Rr637682	regulatory region 637682	986 bp distal
Rr637683	regulatory region 637683	1092 bp distal
Rr637684	regulatory region 637684	818 bp distal
Rr637685	regulatory region 637685	742 bp proximal
Wnt5b	wingless-type MMTV integration site family, member 5B	Intron