rs31666782 SNP Detail

Summary

• ID
  rs31666782
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119475740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCTCAGAG GCCCTCAAGA
  GCTTCTGATG GGCTCTTCCG AGGGTGGCAA CAGCAGGAAG TTTTGGGTTA TCCCTGACAA
  ATGAGGAGGA GCACCTCCCA GTGGCACTGT ACTGGTGTCC CCTCCTCTTG TCATTAAGTC
  ATGCCCCAAG ACCTACTCTG CAGAGGGGAC AGACACAGGA CGGATGTGCG AGATTTCTTT
  Y
  GCTCAACGCT AGCAGAACCC TGAGCCTTCA AAGCTAAAGT GGGACATGCC TGCAGGAGAT
  CCGTCTTCCC GTTTTAATGA CGCTTTTCTT TCCCTCCCTT GGGGCTTTGT TTATCTGTCC
  ATATAAGCCC ATGTAAAAAT ATTGTTCTTA GAGTCCAGCC CATCCACACG TGTTTGCTCA
  GACTTTTAAA GGCAAGCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	FVB/NJ
ss48076091	NES11869935	PERLEGEN	MM_PANEL2	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	FVB/NJ
rs31666782					SNP	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48076091	NES11869935	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119475740 () rs orientation: forward

Symbol	Name	Function Class
Gm68838	predicted gene, 68838	within coordinates
Rr637703	regulatory region 637703	545 bp proximal
Rr637704	regulatory region 637704	1434 bp proximal
Wnt5b	wingless-type MMTV integration site family, member 5B	Intron