rs31666780 SNP Detail

Summary

• ID
  rs31666780
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119475721 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCAGAGAG GCCTCATGGA
  AGCTCAGAGG CCCTCAAGAG CTTCTGATGG GCTCTTCCGA GGGTGGCAAC AGCAGGAAGT
  TTTGGGTTAT CCCTGACAAA TGAGGAGGAG CACCTCCCAG TGGCACTGTA CTGGTGTCCC
  CTCCTCTTGT CATTAAGTCA TGCCCCAAGA CCTACTCTGC AGAGGGGACA GACACAGGAC
  R
  GATGTGCGAG ATTTCTTTTG CTCAACGCTA GCAGAACCCT GAGCCTTCAA AGCTAAAGTG
  GGACATGCCT GCAGGAGATC CGTCTTCCCG TTTTAATGAC GCTTTTCTTT CCCTCCCTTG
  GGGCTTTGTT TATCTGTCCA TATAAGCCCA TGTAAAAATA TTGTTCTTAG AGTCCAGCCC
  ATCCACACGT GTTTGCTCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	FVB/NJ	PWD/PhJ	WSB/EiJ
ss48076089	NES11869934	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	FVB/NJ	PWD/PhJ	WSB/EiJ
rs31666780					SNP	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48076089	NES11869934	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119475721 () rs orientation: forward

Symbol	Name	Function Class
Gm68838	predicted gene, 68838	within coordinates
Rr637703	regulatory region 637703	564 bp proximal
Rr637704	regulatory region 637704	1453 bp proximal
Wnt5b	wingless-type MMTV integration site family, member 5B	Intron