rs31666144 SNP Detail

Summary

• ID
  rs31666144
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119307505 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGAC CAGGTAGCCG GACACACGGG
  Y
  AGCTTGGCAG GCAGAACGCA GGGAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
ss48075185	NES11874818	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
rs31666144					SNP	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48075185	NES11874818	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119307505 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cacna2d4	calcium channel, voltage-dependent, alpha 2/delta subunit 4			Intron
				Noncoding-Transcript-Variant
Cpgi17908	CpG island 17908			within coordinates
Lrtm2	leucine-rich repeats and transmembrane domains 2			mRNA-UTR
				Noncoding-Transcript-Variant
Rr637632	regulatory region 637632			1351 bp distal
Rr637633	regulatory region 637633			850 bp distal
Rr637634	regulatory region 637634			1254 bp distal
Rr637635	regulatory region 637635			203 bp proximal
Rr637636	regulatory region 637636			1556 bp proximal
Tssr62703	transcription start site region 62703			24 bp downstream
Tssr62704	transcription start site region 62704			49 bp downstream
Tssr62705	transcription start site region 62705			124 bp downstream
Tssr62706	transcription start site region 62706			156 bp downstream
Tssr62707	transcription start site region 62707			179 bp downstream
Tssr62708	transcription start site region 62708			262 bp downstream