rs31666102 SNP Detail

Summary

• ID
  rs31666102
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119427134 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGCAAGTT CCTAGGAAAT
  CTCTCTGCAG GTCCTAAGTC TAAGCAAGGC TAAACTGGGT GACAGTGAGG CCATCGGTTC
  AGAGACAGGC AGCCAATGCC TGCTAACATC GCTGTGTTTG CCTTCGCCAG AGGCTGATAG
  GCTGTCTAGG ACCAGATTTC ACAGAGGCTG CAAATTCCAC ACCTACCTGT CTCAGAAACG
  Y
  AAAGGGAAAC TGCACCGGGC CCCAGCAGCT CTTCACCACC CTGTGTGCCA CCAAGTTCCC
  AGCCTACTAC AAGTGGAAAT TTAAAGATTG CCCTAAACCC AACCAACCAA TCAAACAGAG
  ACCCAAACAA AAAAGTCTCT AGTATGTATG TTGTTCCCAC TGTCTGTCAG ATGGGAGGTG
  CATGAAATAA GGCACACAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48075879	NES11871246	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31666102					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48075879	NES11871246	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119427134 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17910	CpG island 17910	896 bp distal
Rr379998	regulatory region 379998	within coordinates
Rr637682	regulatory region 637682	798 bp distal
Rr637683	regulatory region 637683	904 bp distal
Rr637684	regulatory region 637684	630 bp distal
Rr637685	regulatory region 637685	930 bp proximal
Wnt5b	wingless-type MMTV integration site family, member 5B	Intron