rs31666100 SNP Detail

Summary

• ID
  rs31666100
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119427084 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCAATGGG TCATGAGCCT
  CCTCATACCA GGTTCCCCAT CTTACACCCT CTAGCAAGTT CCTAGGAAAT CTCTCTGCAG
  GTCCTAAGTC TAAGCAAGGC TAAACTGGGT GACAGTGAGG CCATCGGTTC AGAGACAGGC
  AGCCAATGCC TGCTAACATC GCTGTGTTTG CCTTCGCCAG AGGCTGATAG GCTGTCTAGG
  M
  CCAGATTTCA CAGAGGCTGC AAATTCCACA CCTACCTGTC TCAGAAACGC AAAGGGAAAC
  TGCACCGGGC CCCAGCAGCT CTTCACCACC CTGTGTGCCA CCAAGTTCCC AGCCTACTAC
  AAGTGGAAAT TTAAAGATTG CCCTAAACCC AACCAACCAA TCAAACAGAG ACCCAAACAA
  AAAAGTCTCT AGTATGTATG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48075877	NES11871245	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31666100					SNP	A	A	A	A	A	A	C	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48075877	NES11871245	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119427084 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17910	CpG island 17910	846 bp distal
Rr379998	regulatory region 379998	within coordinates
Rr637682	regulatory region 637682	748 bp distal
Rr637683	regulatory region 637683	854 bp distal
Rr637684	regulatory region 637684	580 bp distal
Rr637685	regulatory region 637685	980 bp proximal
Wnt5b	wingless-type MMTV integration site family, member 5B	Intron