rs31666098 SNP Detail

Summary

• ID
  rs31666098
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119426189 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGCACTGGT GTTCCAGCCT
  TTGCCTCGGG TGGCGAAACA CACCCGCCCC GAGAAACTTT GTACATTTGG AAAATACCGC
  GCGCGCGCGC GCGCACACAC ACACACACAC ACACACACAC ACACACACAC ACACACACAC
  ACACACACAC AGCACAGCAC AAGCTCCAGG CGGTCCCACG CTGGCTCACC ACGCTGATCC
  Y
  GAGCGTCTGG GTCTCTAGAC TGTCCGGGAG GGGGCGGCAG ATGCTTTTTA GACCGTTGGT
  CTAGGAAATA TGTTTAACCT GGGGCCACTA AGAGAGAAAG GTGGCCGGAG CAGGATTCAG
  AGTTGGGACA GGCCTGTTCC CCAGTCCTTT TGGTTTTCTT GCTTGAGGTC TGAGTTGGGG
  CGGGGCACCA ACAGGCAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48075875	NES11871244	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31666098					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48075875	NES11871244	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119426189 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17910	CpG island 17910			within coordinates
Rr379998	regulatory region 379998			within coordinates
Rr637682	regulatory region 637682			within coordinates
Rr637683	regulatory region 637683			20 bp proximal
Rr637684	regulatory region 637684			148 bp proximal
Rr637685	regulatory region 637685			1875 bp proximal
Wnt5b	wingless-type MMTV integration site family, member 5B			Intron
				mRNA-UTR