CATCC GTATCCTGTC CTCTTAGAGA M GCCATAATCC TCTTTCCTAA GTCAT M = A/C Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss45558130 | mCV25256694 | ABI | CRAMUS_MOUSE | f | SNP | A | C | A | ||||||||||||||
ss46749212 | NES10739081 | PERLEGEN | MM_PANEL2 | f | SNP | A | C | C | A | C | C | A | A | C | A | C | C | A | A | |||
ss135474284 | ENSMUSSNP4105105 | ENSEMBL | ENSEMBL_Sanger | f | SNP | A | C | A | ||||||||||||||
ss320836906 | CHEV_3_89052348 | CHEVERUD | SCREENING_POP | f | SNP | C | A | |||||||||||||||
SNP Consensus Information | ||||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
||||
rs31665418 | SNP | A | A | C | C | A | C | C | A | A | C | C | A | C | C | A | A | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss46749212 | NES10739081 | PERLEGEN | MM_PANEL | f | SNP | A/C |
Location: Chr3:89155733 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi13413 | CpG island 13413 | 1502 bp distal | ||||||
Krtcap2 | keratinocyte associated protein 2 | Intron | ||||||
Rr579998 | regulatory region 579998 | 1982 bp distal | ||||||
Rr580000 | regulatory region 580000 | 1859 bp distal | ||||||
Rr580001 | regulatory region 580001 | 1827 bp proximal | ||||||
Rr580002 | regulatory region 580002 | 1908 bp proximal | ||||||
Tssr30085 | transcription start site region 30085 | 1933 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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