rs31665418 SNP Detail

Summary

• ID
  rs31665418
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:89155733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATCC GTATCCTGTC CTCTTAGAGA
  M
  GCCATAATCC TCTTTCCTAA GTCAT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45558130	mCV25256694	ABI	CRAMUS_MOUSE	f	SNP		A	C						A
ss46749212	NES10739081	PERLEGEN	MM_PANEL2	f	SNP	A		C	C	A	C	C	A	A	C		A	C	C	A		A
ss135474284	ENSMUSSNP4105105	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C						A
ss320836906	CHEV_3_89052348	CHEVERUD	SCREENING_POP	f	SNP											C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31665418					SNP	A	A	C	C	A	C	C	A	A	C	C	A	C	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46749212	NES10739081	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89155733 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13413	CpG island 13413	1502 bp distal
Krtcap2	keratinocyte associated protein 2	Intron
Rr579998	regulatory region 579998	1982 bp distal
Rr580000	regulatory region 580000	1859 bp distal
Rr580001	regulatory region 580001	1827 bp proximal
Rr580002	regulatory region 580002	1908 bp proximal
Tssr30085	transcription start site region 30085	1933 bp downstream