rs31665220 SNP Detail

Summary

• ID
  rs31665220
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119306136 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAC TAGGGTAAGC TTGTCCTGAG
  Y
  GCAGACACAT CCTCTAGCCA AACCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
ss48075181	NES11874816	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
rs31665220					SNP	C	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48075181	NES11874816	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119306136 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cacna2d4	calcium channel, voltage-dependent, alpha 2/delta subunit 4			Intron
				Noncoding-Transcript-Variant
Cpgi17908	CpG island 17908			1166 bp proximal
Lrtm2	leucine-rich repeats and transmembrane domains 2			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr637632	regulatory region 637632			within coordinates
Rr637633	regulatory region 637633			19 bp proximal
Rr637634	regulatory region 637634			94 bp proximal
Rr637635	regulatory region 637635			1572 bp proximal
Tssr62703	transcription start site region 62703			1393 bp downstream
Tssr62704	transcription start site region 62704			1418 bp downstream
Tssr62705	transcription start site region 62705			1493 bp downstream
Tssr62706	transcription start site region 62706			1525 bp downstream
Tssr62707	transcription start site region 62707			1548 bp downstream
Tssr62708	transcription start site region 62708			1631 bp downstream