rs31665218 SNP Detail

Summary

• ID
  rs31665218
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119305340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGATCCACA TGATTCCTTC
  TTAGCACCCT CAAATCAAGT GTTTGCAACA TGCATCAGGG AGTGTCCTCC GCTCCTGATT
  CCTGGGCCCC CATGCTGTGT CTATCTTCCC AGGAGGTCTC CTGCATCCTC CCCTCCTTGC
  CCCCAGCTCT ATACACCTAC AGAGGGGAAG CAGAAAGGGC TTGCATGGTC TACCCGATTT
  R
  TTCTTCAAGG AATCTCAAGG CTAGGCTAGC GAGTGGCCTG CGAGTCATCT TGTCCCATCT
  TAGAGGACTT CCAGGGAGTC TGGACATCTG GTCTAGGCAA TTGGAATTCC TGGTAGCCCG
  GAACACGGGA AACTGAAATG TCCCCTGAGC TGCTGTCACT TGTCTGGCCA TGAGGCCCTC
  CCTTCTAGTA AATGCCCCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
ss48075179	NES11874815	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
rs31665218					SNP	A	A	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48075179	NES11874815	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119305340 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cacna2d4	calcium channel, voltage-dependent, alpha 2/delta subunit 4			Intron
				Noncoding-Transcript-Variant
Cpgi17908	CpG island 17908			1962 bp proximal
Lrtm2	leucine-rich repeats and transmembrane domains 2			Intron
				Noncoding-Transcript-Variant
Rr637632	regulatory region 637632			46 bp proximal
Rr637633	regulatory region 637633			815 bp proximal
Rr637634	regulatory region 637634			890 bp proximal