rs31665216 SNP Detail

Summary

• ID
  rs31665216
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119304491 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTGCATA CAGTTAGCCT
  AGAGAAGCTG CGACAGGAAA TGGCAGATTT TAAGGAAAAA TGAGTCTAGA GCTCACCCAG
  AACCTTAACT AACCTTGCCT AAGTCAGGCC AAGACAAGGG CACCAACCCG AGGGCCTCAT
  ACAAGCTTTT AACATGGGGA GATGCTAACA GCCACAGACA GAGAGCTACA CAATGCTACG
  Y
  TCTTCATCCT CATACAGTTC AGTAAGGTGT CTTTAGCAAC ATCATAGGGA AACTGAGGCA
  TGGAAAAGGT TAGGAAAATG GAAGAATGTC GTCAATTGGA CCTGTACCTG TTTTCTGTCC
  ACAAAATTTT TGACTCAGTT GCCCTCACAA GTTCCTGCCT CAGCCCTACC CCTCATGTAA
  AGGTTGATTC AGAAACAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss48075177	NES11874814	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31665216					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48075177	NES11874814	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119304491 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cacna2d4	calcium channel, voltage-dependent, alpha 2/delta subunit 4			Intron
				Noncoding-Transcript-Variant
Lrtm2	leucine-rich repeats and transmembrane domains 2			Intron
				Noncoding-Transcript-Variant
Rr637632	regulatory region 637632			895 bp proximal
Rr637633	regulatory region 637633			1664 bp proximal
Rr637634	regulatory region 637634			1739 bp proximal