rs31664820 SNP Detail

Summary

• ID
  rs31664820
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:161516568 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACATA TATACCTATG TACCTATGTA
  K
  GTAGGTAGGT ATATAATTAG TTAAG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45057525	mCV23478109	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	G	T
ss145919539	ENSMUSSNP2708505	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31664820					SNP	G	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161516568 () rs orientation: forward

Symbol	Name	Function Class
Rr421818	regulatory region 421818	1005 bp distal
Rr421819	regulatory region 421819	1240 bp distal
Rr421820	regulatory region 421820	within coordinates