rs31664380 SNP Detail

Summary

• ID
  rs31664380
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119468381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGGAGGG AGGGAGGGAG
  GGGGGCTTTG ATGTGCAGCC TCCGACAGCT TCGCTTCTGG CCTTCAGGCT TTATATTTAT
  GTGTTGTCAT CTCTCTGTCT CCATCTCCCT CTCCCGCCAC CTCCTGTACG TTTTCTCTAG
  TGAAGGTTTT AAAGAACAGA GTTTTTTCTG TGAATTTCAC TTGAGGCAGG AATACTCAGC
  W
  CTTCAGGCCT GAAATGTCCT GTCCAGAGCC CTGCAGTTGG TACCCAAGGG CCTACATTCA
  GCAGGTAATG TCAACATGGC TTTAATGCAC ACAGGGAGAA GCCAGGGCCT TCCAGGGAGG
  GAGACAGTGT CAGATCCCTC ATGGGCCCTC CAGGAGGCAA CTGACTCCCA CAGCCTGAAA
  TTCCATTTCC TCAATGAAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	FVB/NJ	PWD/PhJ
ss48076059	NES11870114	PERLEGEN	MM_PANEL2	f	SNP	T	A	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	FVB/NJ	PWD/PhJ
rs31664380					SNP	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48076059	NES11870114	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119468381 () rs orientation: forward

Symbol	Name	Function Class
Rr637698	regulatory region 637698	1043 bp distal
Rr637699	regulatory region 637699	1491 bp distal
Rr637700	regulatory region 637700	within coordinates
Rr637701	regulatory region 637701	457 bp distal
Rr637702	regulatory region 637702	384 bp proximal
Wnt5b	wingless-type MMTV integration site family, member 5B	Intron