rs31664376 SNP Detail

Summary

• ID
  rs31664376
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119468023 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTAGCTCA AACATACAGA
  GCTCTTGTTT TGTTTTGTTT TGTTTTGTTT TGTTTTGTTT TGTTAAGAGA ATGAATAAGA
  CAGACCTCTA GTATGCGCTG CGCTTGAGTG TGAAGAACAT TGCTATTCCC AGAACTACCA
  AGAGGACTCT TAGAAAATCA TGAAATCTCC CAGGGGAGAT TATGGAAACC CGTTATGGAA
  R
  CCATTGCTGA AATGTGTCTC TGAGTGACTA TATAGAACGG AGCCGGGTTT GGAAAGAACA
  ATGCCAGGAA GGGAGTCTGC AGACAAGAGA AAGGTCCCCA CATGACTCGG AGGACCGAGG
  ACGCTGGATG ACAGGACCCT CACAGCCCTG GGCACGGAGA GGGAGGGAGG GAGGGAGGGG
  GGCTTTGATG TGCAGCCTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	PWD/PhJ
ss48076055	NES11870112	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	PWD/PhJ
rs31664376					SNP	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48076055	NES11870112	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119468023 () rs orientation: forward

Symbol	Name	Function Class
Rr637698	regulatory region 637698	685 bp distal
Rr637699	regulatory region 637699	1133 bp distal
Rr637700	regulatory region 637700	within coordinates
Rr637701	regulatory region 637701	99 bp distal
Rr637702	regulatory region 637702	742 bp proximal
Wnt5b	wingless-type MMTV integration site family, member 5B	Intron