rs31664374 SNP Detail

Summary

• ID
  rs31664374
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119467743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAGGATG TGAGGTTTCT
  TGCACGGTGT AAATGCAGAA CGTAGACGAG AGAAAGGCAG CCGAAGACAA GCATGCACTC
  AGAGCCGCGG GGCCACCCTG GCCAGATTCC ACATGCTGCA GTGAGGGGTG GGCTGAGGGC
  GTAGAGGATG GGCTCTTGTC CTCTTGACAC TTAGAGTCTC TGAGGTCAGA GAATCAGAGC
  R
  TGGGTCTGAG GCAGCTGCTA CTGCCATGGG ACAAAGGAGG GAAGACTTCT ACCAGCCTGT
  GAGCCGGGTG AGCCCCGATT ATTAGCTCAA ACATACAGAG CTCTTGTTTT GTTTTGTTTT
  GTTTTGTTTT GTTTTGTTTT GTTAAGAGAA TGAATAAGAC AGACCTCTAG TATGCGCTGC
  GCTTGAGTGT GAAGAACATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss48076053	NES11870111	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs31664374					SNP	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48076053	NES11870111	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119467743 () rs orientation: forward

Symbol	Name	Function Class
Rr637698	regulatory region 637698	405 bp distal
Rr637699	regulatory region 637699	853 bp distal
Rr637700	regulatory region 637700	within coordinates
Rr637701	regulatory region 637701	160 bp proximal
Rr637702	regulatory region 637702	1022 bp proximal
Wnt5b	wingless-type MMTV integration site family, member 5B	Intron